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Beni-Suef University Journal of Basic and Applied Sciences

Table 3 Comparison of residues involved in hydrophobic bonding of aptamers against NSP16 binding domain of NSP10

From: Search for RNA aptamers against non-structural protein of SARS-CoV-2: Design using molecular dynamics approach

Name of the complex

Interacting amino acids of NSP10

NSP10-NSP16 (PDB-6W75)

Asn40, Cys41, Val42, Met44, Thr47, val57, Pro59, Gly69, Gly70,Cys77, Arg78

NSP10-053

Asn40, Val42, Ile55, Thr56, Ala71, Ser72, Arg78, Pro86, Phe89, Lys93, Gly94, Tyr96, Val116, Cys117, Thr118, Gly121

NSP10-010

Val42, Lys43, Met44, Leu45, Val57, Thr58, Pro59, Gly69, Ala71, Cys77,Phe89, Gly94

NSP10-001

Thr39, Asn 40, Val42, Met44, Leu 45, Val57, Gly69, Ser72, Arg78, Phe89, Gly94, Lys95

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