From: Analysis of codon usage patterns in open reading frame 4 of hepatitis E viruses
Amino acid | Codon | Hosts | ||
---|---|---|---|---|
Human | Rat | Ferret | ||
Phe (F) | UUU | 0 | 0.81 | 1.08 |
 | UUC | 2 | 1.19 | 0.92 |
Leu (L) | UUA | 0.9 | 0.58 | 0.25 |
 | UUG | 2.4 | 1.32 | 2.14 |
 | CUU | 0.3 | 0.51 | 0.45 |
 | CUC | 0.3 | 0.99 | 0.55 |
 | CUA | 0.9 | 1.25 | 1.34 |
 | CUG | 1.2 | 1.35 | 1.26 |
Ile (I) | AUU | 1.5 | 1.11 | 1 |
 | AUC | 1.5 | 0.96 | 1 |
 | AUA | 0 | 0.93 | 1 |
Val (V) | GUU | 0 | 1.11 | 0.93 |
 | GUC | 0.8 | 0.12 | 1.58 |
 | GUA | 0.8 | 0.98 | 0.47 |
 | GUG | 2.4 | 1.78 | 1.02 |
Ser (S) | UCU | 0 | 0.84 | 1.95 |
 | UCC | 1.2 | 1.29 | 0.51 |
 | UCA | 1.36 | 0.45 | 1.37 |
 | UCG | 1.53 | 1.29 | 0.58 |
 | AGU | 1.09 | 0 | 0 |
 | AGC | 0.82 | 2.13 | 1.58 |
Pro (P) | CCU | 0.53 | 1.23 | 1.33 |
 | CCC | 1.47 | 0.87 | 1.45 |
 | CCA | 0.67 | 0.87 | 0.64 |
 | CCG | 1.33 | 1.03 | 0.58 |
Thr (T) | ACU | 0.39 | 0.41 | 0.63 |
 | ACC | 1.25 | 0.71 | 1.5 |
 | ACA | 0.78 | 1.41 | 0.75 |
 | ACG | 1.57 | 1.47 | 1.13 |
Ala (A) | GCU | 1.23 | 0.58 | 0.58 |
 | GCC | 1.54 | 1.94 | 1.87 |
 | GCA | 0.31 | 1.03 | 0.97 |
 | GCG | 0.92 | 0.45 | 0.58 |
Tyr (Y) | UAU | 2 | 0.5 | 0.4 |
 | UAC | 0 | 1.5 | 1.6 |
His (H) | CAU | 0 | 0.4 | 0.11 |
 | CAC | 0 | 1.6 | 1.89 |
Gln (Q) | CAA | 0.33 | 0.56 | 0.34 |
 | CAG | 1.67 | 1.44 | 1.66 |
Arn (N) | AAU | 0 | 0 | 0 |
 | AAC | 2 | 2 | 2 |
Lys (K) | AAA | 0 | 0 | 0 |
 | AAG | 2 | 2 | 2 |
Asp (D) | GAU | 2 | 1.88 | 2 |
 | GAC | 0 | 0.12 | 0 |
Glu (E) | GAA | 0 | 0.11 | 0.44 |
 | GAG | 2 | 1.89 | 1.56 |
Cys (C) | UGU | 0 | 0.51 | 1 |
 | UGC | 2 | 1.49 | 1 |
Arg (R) | CGU | 0.6 | 0.29 | 0.52 |
 | CGC | 1.2 | 2.04 | 2.2 |
 | CGA | 1.2 | 0.2 | 0.05 |
 | CGG | 1.2 | 1.55 | 1.22 |
 | AGA | 0.6 | 0.04 | 0.26 |
 | AGG | 1.2 | 1.88 | 1.76 |
Gly (G) | GGU | 0.36 | 0.73 | 0.84 |
 | GGC | 1.82 | 2.12 | 1.26 |
 | GGA | 0.36 | 0 | 0.84 |
 | GGG | 1.45 | 1.15 | 1.05 |