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Table 6 HawkDock-MM/GBSA per-residue binding energy for the wild-type protein–protein complexes

From: Computer-aided molecular modeling and structural analysis of the human centromere protein–HIKM complex

Chain(s)

Position

Residue(s)

VDW

ELE

GB

SA

Total (Kcal/mol)

H

119

LEU

 − 3.88

 − 2.80

2.74

 − 0.68

 − 4.62

H

225

VAL

 − 0.06

 − 0.36

0.31

0

 − 0.11

H

233

LEU

 − 0.04

0.17

 − 0.15

0

 − 0.02

H

234

LYS

 − 1.73

1.37

 − 0.27

 − 0.35

 − 0.98

H

238

LEU

 − 1.11

1.63

 − 1.02

 − 0.26

 − 0.75

M

94

LEU

 − 3.54

 − 1.07

1.98

 − 0.55

 − 3.18

M

163

LEU

 − 2.38

 − 0.58

0.7

 − 0.36

 − 2.62

  1. The output displays the mutated chains, residue positions, van der Waals potential, electrostatic potential, generalized born scores, solvent accessibility and the total binding energy score