Antagonistic potential of some phosphate solubilizing fungi against some phyto-pathogenic fungi

Abstract

Background

Little phosphorus availability in soil is one of the major forces for crop production. Phosphate solubilizing fungi enhance available phosphorus from soils and contribute to achieve the plants phosphorus requirement. Phosphate solubilizing fungi are important component of soil microbiota and play an essential role in the biogeochemical cycling of phosphorus in natural ecosystems.

Results

The study tested the potential of the isolated phosphate solubilizing fungi to inhibit the growth of Alternaria alternata, Fusarium solani, Geotrichum candidum, Rhizoctonia solani and Sclerotium rolfsii. A total of 137 fungal isolates were isolated and identified from 30 soil samples. Nine isolates solubilized inorganic phosphate (tricalcium phosphate). Eight of these isolates were isolated from the rhizosphere of Alhagi graecorum Boiss., Allium cepa L., Ehrharta calycina Sm., Ludwigia stolonifera (Guill. & Perr.) Raven, Mentha longifolia L., Phragmites communis Trin.,Triticum aestivum L. and Zea mays L., respectively and one isolate was isolated from island^'s free soil. Purified single spore cultures of these nine isolates were identified to species level by multi loci DNA barcoding using internal transcribed spacer1and 2 (ITS1 and ITS 2) of the rRNA gene cluster, Calmodulin (CaM) and β-tubulin)BenA) gene markers.

Conclusions

The isolated phosphate solubilizing fungi belonged to two genera, Aspergillus and Penicillium. The phosphate solubilization index ranged from 1 to 1.5. Aspergillius japonicus 2 had the highest solubilization index (1.5) and also had the highest inhibition percentage (70%) against Alternaria alternata. This isolate is promising for development of biocontrol agent of Fusarium solani, Geotricum candidium and Alternaria alternata. The highest phosphate solubilization by Aspergillius japonicus 2 was obtained by using sucrose as carbon source and also ammonium chloride and tryptophan as nitrogen source. The highest solubilization percentage was 78.2% at optimum glucose concentration (5%) while the pH value that gave the highest solubilization percentage (90%) was 3. After eight days of incubation of Aspergillius japonicus 2, the solubilization percentage reached its maximum value (80.2%).

1 Background

Declining soil fertility in Egypt is generated due to the continuous cropping without replacing soil nutrients. The continuous application of phosphate fertilizer and soil erosions are the common problems that reduce the crop productivity. Moreover, the pH of Egyptian soil is alkaline and phosphate can precipitate to form calcium phosphates which are insoluble in soil. Deficiency of soil phosphorus is the most critical factors affecting plant growth in soils. Phosphorus (P) is one of the major nutrients for crop production [1].

The inorganic phosphorus is found in the soil at 20–80% with calcium, iron and aluminum [2] and the organic form comes from the decaying living organisms [3]. Phosphorus is one of the lowest element on the earth (0.1% available of total) [4]. The current global phosphate rock could be decreased within 50–100 years due to increasing demand and limited P mineral reserves. Phosphate solubilizing fungi are considered as renewable and potential suppliers of soluble phosphorus. They have a great advantage for plants through solubilization and mineralization [5]. Studies on phosphate solubilization by saprophytic soil fungi are still rare and a few species have been studied, with a predominance of Aspergillus sp and Penicillium sp [6]. The application of PSF to seeds or crops or soil is a promising strategy to enhance world food production without causing any environmental hazard [7]. A wide range of soil fungi are reported to solubilize insoluble phosphorus. Aspergillus niger and Penicillium funiculosum are the most dominant soil fungi capable of phosphate solubilization [8]. Elias et al. [9] isolated and characterized phosphate solubilizing fungi from different rhizosphere on solid Pikovskaya (PVK) medium. The phosphate solubilizing fungi were Aspergillus (53.69%), Penicillium spp. (22.21%) and Fusarium (10.58%). Morales et al. [10] isolated phosphate solubilizing fungi from different habitats such as agricultural land, arctic region, forest and mangrove.

Gontia-Mishra et al. [11] isolated phytase producing fungi and identified them by 18S rDNA sequence analysis. Panchala et al. [12] isolated and identified the phosphate solubilizing Penicillium expansum NAUGB1 based on its morphological and molecular characters. Also the effect of Penicillium expansum NAUG-B1on the growth of brinjal (Solanum melongena L.) was observed. Although, some genes were isolated and characterized from some phosphate solubilizing fungi, knowledge of the genetics of phosphate solubilization by fungi is rare and the explanation of solubilization of insoluble phosphorus at the molecular level by microorganism is inconclusive [13].

The molecular identification of PSF has not been studied in details, so it is necessary to increase our knowledge on this subject. The solubilization efficiency in presence of carbon and nitrogen sources was recorded by Pradhan and Sukla [14] who reported that glucose and maltose caused highest solubilization of phosphorus, followed by sucrose, xylose and galactose. Bhattacharya et al. [15] studied the solubilization of tricalcium phosphate by Aspergillus niger MPF-8 isolated from Muthupettai mangrove. Aspergillus niger MPF-8 showed maximum phosphate solubilization 401 µg/ml and 427 µg/ml by using glucose and ammonium sulphate supplementation.

Seshadri et al. [16] cleared that Aspergillus niger utilized mannitol as carbon and nitrate as nitrogen sources during phosphate solubilization with high efficiency.

The present study aimed to isolate, molecularly characterize and evaluate the antagonistic potential of the phosphate solubilizing fungi against some phyto-pathogenic fungi.

2 Methods

2.1 Study area

Soil samples were collected from Beni-Suef governorate as shown in Fig. 1 (28° 36 N–29° 26' latitude and 30° 36' E–31° 21' E), Egypt. The climate of this region is arid, with annual rainfall of 1 L/m².

Fig. 1

A map of the study area (Beni-Suef governorate, Egypt). Black symbols refer to sampling sites in different habitats from which the soil samples were collected

2.1.1 Isolation and screening of P-solubilizing fungi (Qualitative method)

Thirty soil samples were obtained from different localities and habitats as shown in Fig. 1. Soil samples were taken from rhizospheres of Alhagi graecorum Boiss., Allium cepa L., Ehrharta calycina Sm., Ludwigia stolonifera (Guill. & Perr.) Raven, Mentha longifolia L., Phragmites communis Trin., Triticum aestivum L. and Zea mays L. Phosphate solubilizing fungi (PSF) were isolated by the dilution plate method, this method was modified by Johnson et al. [17]. 10 g of rhizosphere soil samples were taken at profile (0–10 cm) by using sterile auger and air dried for 24 h then passed through a 0.5 mm soil sieve to remove large particles. Pikovskaya medium was used in the isolation of PSF.

The compositions of the medium (g/l) are glucose, 10 g; Ca₃(PO₄)_2, 5 g; (NH₄)₂SO₄,0.5 g; NaCl,0.2 g; MgSO₄·7H₂O,0.1 g; KCl, 0.2 g; yeast extract, 0.5 g; MnSO₄·7H₂O, 0.003 g; FeSO₄·7H₂O, 0.003, agar, 15 g and 1000 ml distilled water. The pH of the medium was adjusted to 7 before autoclaving. Rose Bengal as a bacteriostatic agent was added to the medium (10 ml/l) at concentration 1/15000 [18]. One ml for each dilution was put in sterilized petri-dishes. Four replicates for each dilution were used. Finally, the melted PVK medium was poured in the plates containing samples. The plates were incubated at 25–28 °C for 2–7 days in inverted position. After incubation, fungal colonies which showed clear zones around the colonies isolated and purified.

2.2 Purification of phosphate solubilizing fungi

Pikovskaya,s medium without Rose Bengal addition was prepared for purification. Streak plate method was used to purify the fungal isolates. Monospore technique or hyphal tip method [19] was used to obtain monospore fungal colony. Two drops of tween 80 were added to spore suspension of pure culture of PSF. The streak plate method was used to spread the spore suspension on PDA media by sterile cotton swab. The plates were incubated at 25 °C for 24 h. The plates were examined under light microscope to choose hyphal tip. The microscopic hyphal tip as shown in Fig. 2 was cut by sterile forceps and transferred to plates containing PDA media to complete its growth. The pure cultures were preserved on Potato Dextrose Agar (PDA) slant at 4 °C for further investigation.

Fig. 2

Hyphal tip of Aspergillus niger under light microscope

2.2.1 Calculation of solubilization index of phosphate solubilizing fungi (PSF)

The isolates were assayed for phosphate solubilization under in vitro condition by the method described by Iman [20] on Pikovskaya’s agar medium. The fungal isolates were put onto the center of plates by pin point inoculation in triplicate under aseptic condition. The plates were incubated at 25–28 °C for 7 days. The clear zone and colony diameters of the fungal isolates were measured in centimeters to determine the solubilization index. The Phosphate solubilization index was calculated by The ratio of the total diameter (colony + halo zone) and the colony diameter.

2.2.2 Morphological identification of phosphate solubilizing fungi

The fungal isolates were grown on Dox agar medium for 2–3 days at 25 ± 2 °C and identified according to Moubasher [21].

2.2.3 Extraction of genomic DNA, PCR amplification and sequencing

The molecular identification was conducted in Microbiology and Applied Genomics Group, Institute of Chemical, Environmental & Bioscience Engineering Vienna, University of Technology, Austria. PSF were grown on malt extract agar medium and the extraction of DNA was carried by the plant DNeasy Minikit (QIAgen GmbH, Hilden, Germany) according to the manufacturer’s instructions. The nuclear DNA region containing the ITS1 and 2 regions of the rRNA gene cluster was amplified by PCR. Secondary markers were used in addition to ITS, namely calmodulin (CaM) for genus Aspergillus and β-tubulin (BenA) for genus Penicillium. PCR products were purified with the QIAquick PCR Purification Kit (QIAgen) and were subjected to automated sequencing at MWG (Martinsried, Germany).The obtained sequences were subjected to sequence similarity comparison of the sequences from the NCBI Gene Bank database (www.ncbi.nlm.nih.gov).

2.3 Antagonistic potential of phosphate solubilizing fungi

Nine PSF isolates were tested for inhibiting the growth of A. alternata, F.solani, G. candidum, R. solani and S. rolfisii by dual culture on PDA in petri dishes according to Helrich [22]. The test pathogenic fungi were collected from Agricultural research center, Giza. The tested PSFs and fungal pathogen were separately cultured by streak plate method in PDA for 7 days. Five mm disc from pathogens and PSFs were grown in two polar side positions in plates of PDA. The treatments were replicated three. The dual cultures were incubated at 25–30 °C for 7 days. The diameters of colonies of both phosphate solubilizing fungi and fungal pathogens were measured after 7 days of incubation. The percentage of growth reduction of the pathogens was calculated using

$$\% \;{\text{growth inhibition}} = \frac{{R_{c} - R_{t} }}{{R_{c} }} \times 100$$

where R_c is colony diameter of pathogen (control) and R_t is colony diameter of pathogen inoculated with tested fungi.

2.4 Effect of different carbon sources and glucose concentration on phosphate solubilization by Aspergillus japonicus 2

The used carbon sources (1%) were xylose, sucrose, starch and mannitol instead of glucose in PKV medium according to Jayaraman and Ilyas [23]. PKV medium was prepared without carbon source and different glucose concentrations (0–5%) were added. Five mm diameter discs from 5 days old colony of Aspergillus japonicus 2 grown on PDA medium was inoculated to 100 ml Pikovskya broth medium with different carbon sources and different glucose concentrations. Sterilized Pikovaskaya medium without carbon source was used as control. Culture of Aspergillus japonicus 2 was incubated at 28 °C ± 2 °C, for 7 days under shaking conditions (121 rpm). The culture was harvested after 7 days of incubation, centrifuged at 15,000 rpm for 10 min to remove the cells and debris, and then subjected to analysis. The solubilized phosphorus was estimated by ascorbic acid method [24].

2.5 Effect of different nitrogen sources on the phosphate solubilization by Aspergillus japonicus 2

The nitrogen source (0.05%) ammonium sulphate in basel PVK medium was replaced by ammonium chloride, sodium nitrate, urea and tryptophan according to Jayaraman and Ilyas [23]. Sterilized Pikovaskaya medium without nitrogen source was used as control. Culture of A. japonicus 2 was incubated at 28 °C ± 2 °C, for 7 days under shaking conditions (121 rpm).The culture was harvested after 7 days of incubation, centrifuged at 15,000 rpm for 10 min to remove the cells and debris and then subjected to analysis. The solubilized phosphorus was estimated by ascorbic acid method.

2.6 Effect of different pH values on the solubilization activity of Aspergillus japonicus 2

To determine the optimum pH for tricalcium phosphate (TCP) solubilization by A. japonicus 2, fungal discs (5 mm) from four days, old culture were inoculated into 100 ml broth PKV medium. The initial pH of the culture medium was adjusted by adding 1 N HCL or 1 N NaoH solution. The different initial pH (3, 4, 5, 6, 7 and 8). Culture of A.japonicus 2 incubated at 28 °C ± 2 °C, for 7 days under shaking conditions (121 rpm) for 7 days. The solubilized phosphorus was estimated as mentioned above.

2.7 Effect of incubation periods on the phosphate solubilization by Aspergillus japonicus 2

The fungal discs of A. japonicus 2 were incubated at 28 °C ± 2 °C on different time intervals (0, 2, 4, 6, 8 and 10 days) under shaking conditions (121 rpm) to study the effect of time on solubilization activities by A. japonicus 2.The culture was harvested at each time intervals and centrifuged at 15,000 rpm for 10 min to remove the cells and debris, and then subjected to analysis. The solubilized phosphorus was estimated as mentioned above.

2.8 Statistical analysis

The experiments were designed in three replicates. Statistical analysis was operated using one-way analysis of variance (ANOVA). Post-hoc mean comparison was performed by Duncan’s multiple range tests at p ≤ 0.05 by using SPSS software version 20.

3 Results

3.1 Isolation, characterization and selection of phosphate solubilizing fungi (PSF)

In this study, a total of 137 fungal isolates were obtained from 30 rhizosphere soil samples cultivated with different plants, Alhagi graecorum Boiss, Allium cepa L, Ehrharta calycina Sm, Mentha longifolia L, Phragmites communis Trin, Triticum aestivum L and Zea mays L as shown in Table 1. Out of the isolated fungi, a total of 9 phosphate solubilizing fungal cultures having potential of phosphate solubilization were isolated (Table 1). All the isolated PSF belonged to Aspergillus and Penicillium genera. Total counts of the isolates ranged from 0.03 to 2.5 colonies/mg dry soil with percentage of 0.02–1.8%. These results were observed for P. variabile and P. expansum respectively. The phosphate solubilization index of the isolates were shown in Table 1. The solubilization index (SI) of A. niger, A. carbonaceous, A. japonicus 3, P. expansum and P. purpurgenum was 1while SI of A. japonicus 2 was 1.5.

Table 1 Total number of PSF isolated from rhizosphere soils (9 samples) of different plants grown in Beni-Suef governorate at different localities

3.2 Molecular identification of phosphate solubilizing fungi

Nine fungal isolates were selected to be identified using calmodulin (CaM) for genus Aspergillus and β-tubulin (Ben A) for genus Penicillium. These isolates were identified morphologically and molecularly but the result of blasting from NCBI cleared that nine isolates showed similarity between the isolates to be five isolates as shown in Table 2. The molecular method confirmed that the isolate to be A. niger and A. tubingensis with 100% and 99.4% respectively identity to 18S rRNA gene sequences of A. niger and A. tubingensis in NCBI database. The accession numbers for A. niger and A. tubingensis are EF661154.1 and EF661151.1 respectively. The identification and accession numbers in Gene Bank according to blast were represented in Table 2. The sequences of P. chrysogenum and Talaromyces muroii were submitted in NCBI Gene Bank under accession number AY495981.1and KJ865727.1 with similarity 98% and 94% respectively. Talaromyces cellulolyticus was submitted in NCBI Gene Bank under accession number AB773823.1with similarity 93%.

Table 2 Identity (%) of Aspergillus and Penicillium isolated in this study and most similar NCBI gene bank accession number

3.3 The antagonistic activity of PSF against fungal pathogen

A. japonicus 2 had the highest percentage of inhibition against F. solani (65%), G. candidum (52 %) and A. alternata (70%) as shown in Fig. 3. On the other hand, A. japonicus 2 had low ability to suppress the growth of R. solani (16%) and S. rolfsii (19%) as shown in Table 3. P. purpurogenum showed inhibition percentage of 68% against A. alternata. On the other hand, P.purpurogenum showed no inhibition percentage against S. rolfisii. P. funiculosum cleared inhibition percentage (19 and 35%) against F.solani and S. rolfisii, respectively.

Fig. 3

Antagonistic potential of A. japonicus 2 against a F. solani, b G. candidum and c A. alternata

Table 3 Antagonistic potential of phosphate solubilizing fungi evaluated as percentage of growth inhibition of fungal pathogens

3.4 Effect of carbon sources and glucose concentrations on content of solubilized P by Aspergillus japonicus 2

The results in Fig. 4 revealed that mannitol was the poorest carbon source for phosphate solubilization by A. japonicus 2. In contrast, no significant difference in phosphate solubilzation was observed among the remaining carbon sources. The solubilization of tricalcium phosphate in presence of mannitol as carbon sources didn^'t show significant change when compared with control (absence of carbon source) but the other carbon sources showed significant difference compared with control.

Fig. 4

Solubilization of tricalcium phosphate by A. japonicus 2 in liquid medium amended with different carbon sources. The values are means of three replicates. Means labeled with the same letter are not significantly different (P ≤ 0.05)

The results in Fig. 5 showed gradually increase in soluble P by A. japonicus 2 with increasing the glucose concentration. There was visible increase in soluble P by increasing glucose concentration from 0 to 2% and after that the percentage of soluble P became constant at glucose concentration of 3 and 4%. Finally, the percentage of soluble P increased (78.1%) at 5% glucose concentration.

Fig. 5

Changes of phosphate solubilization by A. japonicus 2 with respect to change in glucose concentrations

3.5 Effect of nitrogen sources on content of solubilized P by Aspergillus japonicus2

The results in Fig. 6 cleared that ammonium chloride and tryptophan were the best nitrogen sources utilized by Aspergillus japonicus 2 to solubilize the tricalcium phosphate. The percentage of solubilized phosphorus was 77.8 and 75.25% in presence of ammonium chloride and tryptophan, respectively. Aspergillus japonicus 2 revealed the lowest solubilization activity (69.3%) in the presence of sodium nitrate.

Fig. 6

Solubilization of tricalcium phosphate by A. japonicus 2 in liquid medium amended with different nitrogen sources. The values are means of three replicates. The labeled columns with the same letter are not significantly different (P ≤ 0.05)

3.6 Effect of pH values on phosphate solubilization by Aspergillus Japonicus 2

The results in Fig. 7 cleared that the lower pH of the medium, the higher phosphate solubilized percentage. The initial pH had significant effects on tricalcium phosphate solubilization. The maximum content of soluble P released by A. japonicus 2 was 90% at initial pH 3 while the minimum content of soluble P was 45.6% at initial pH 8.

Fig. 7

Effect of different pH on phosphate solubilization by A. japonicus 2 in Pikovskaya’s broth medium after 7 days of incubation. The labeled columns with the same letter are not significantly different (P ≤ 0.05)

3.7 Effect of incubation time on phosphate solubilization by Aspergillus japonicus 2

The decrease in solubilized P percentage at the beginning of experiment is clear in Fig. 8 and the P concentration reached to maximum by the fungus after 8 days of incubation. The highest amount of solubilized phosphorus (80.2%) was recorded by A. japonicus2 after 8 days of incubation after that the solubilized P decreased to reach 75.2% at 10 days of incubation.

Fig. 8

Effect of incubation time on phosphate solubilization by A. japonicus 2 in Pikovskaya’s broth medium

4 Discussion

Phosphate is a nutrient that is adaptable for the growing of yields, with only 0.1% of total phosphorous in the soil available to plants [25]. PSMs able to announcement phosphorus from the soil reserves play a main role in soil fertility when P availability is low or P request is high. Most studies focus on the effect of PSB and their potential use for the enhancement of soil fertility [26]. However, insufficient filamentous fungi are also involved in phosphate solubilization, especially Aspergillus spp. and Penicillium spp. [9].

The present study cleared that the rhizosphere soils of different plants collected from Beni-Suef governorate supported different groups of P-solubilizing fungi. The most dominant species belonged to two genera, Aspergillus and Penicillium. Similarly, Chuang et al. [27], Onyia et al. [28] and Verma & Ekka [29] isolated P-solubilizing fungi such as A. niger and Penicillium spp. from various rhizospheric soil samples. In the present study, Aspergillus spp. were the most frequently occurring P-solubilizing fungi which may be due to the efficiency of Aspergillus sp. in root colonization [30]. The halo zone around the colonies was considered to be indicative of phosphate-solubilization activity [31]. The percentage of PSF in this study ranged from 0.02 to 1.8%. These results agree with Chen et al. [32] who reported that PSF are very few in soil constituted 0.1- 0.5% of the fungal populations. The molecular methods revealed degree of similarities between nine isolates to be five isolates. So these isolates need another gene to separate between them in the future studies. Ruangsanka [33] isolated A. niger from asparagus rhizosphere which antagonized the growth of F. oxysporum with high inhibition percentage of 64%. It is important to supply the plant with phosphate solubilizing fungi and at the same time it suppresses soil born plant pathogens.

A. japonicus2 showed the highest phosphate solubilizing potential among the fungal isolates and it caused the highest growth inhibition percentage of 70 and 65% against Alternaria alternate and Fusarium solani respectively. This agrees with Khan and Khan [34, 35] who studied the biocontrol effect of A. niger against Fusarium wilt in tomato (F. oxysporum f. sp. lycopersici; Fol). This study recommended the application of A. japonicus2 which has a dual effect in the agricultural field. It solubilizes the inorganic phosphate and protected the plant against soil pathogen.

The solubilization of phosphate is not a simple phenomenon and depends on many factors, such as the nutritional, physiological and growth conditions of the cultures [36].The optimum conditions to maximize the solubilization of tricalcium phosphate by fungi were demonstrated in this paper, and results showed that the optimum conditions to solubilize tricalcium phosphate was achieved by using glucose, sucrose and xylose as carbon sources. Our results were in agreement with Bhattacharya et al. [15] who found that A. niger caused the highest solubilization of phosphorus when Pikovskaya broth medium amended with glucose as carbon source and ammonium sulphate as nitrogen source. A number of fungi had been reported to solubilize phosphate only in the presence of ammonium salts as nitrogen source [14]. Among the nitrogen sources used, ammonium chloride and tryptophan were found to be the best. Our study demonstrated that the optimum glucose concentration was 5% and the optimum pH was 3. The increasing in the content of released phosphorus by decreasing the pH value confirms the organic acid theory for phosphate solubilization [37].

The time of incubation, strain of A. japonicus, and types of nutritive medium significantly influence the process of phosphate solubilization [38]. The above experimental results indicated the decrease in phosphorus concentration at the beginning of the experiment was due to utilization of P in growth and development of the organism during this period [39]. Our results agreed with Vyas et al. [40] who found increase the prolongation of incubation period from 3 to 9 days, followed by a significant decrease after 12 day of incubation.

5 Conclusions

A. japonicus 2 proved to be a potential phosphate solubilizing fungus. Furthermore, the ability of A. jabponicus 2 to convert insoluble tricalcium phosphate to soluble form was greatly enhanced by the incorporation of glucose and ammonium chloride in the medium. In addition, A. japonicus2 inhibited the growth of Alternaria alternata, Fusarium solani and Geotrichum candidum with high efficiency. Due to its numerous beneficial effects, A. japonicus2 strain has the potential to be established and commercially framed as a biofertilizer for field application, thus helping in increased phosphorus uptake by plants. Further studies should be done on isolation and identification of genes responsible for mineral phosphate solubilization activity by A. japonicus 2.